skbio.parse.sequences.FastaIterator

class skbio.parse.sequences.FastaIterator(seq, qual=None, transform=None, valid_id=True, valid_length=True, **kwargs)[source]

Populate state based on fasta sequence and qual (if provided)

Methods

initialize_state(item) Do nothing here as the subclassed iterators update state directly
transform(dec_self) Transform state if necessary
valid_lengths(dec_self)
validate_ids(dec_self)