This module defines custom exception classes used throughout the core scikit-bio codebase.
| FileFormatError | Exception raised when a file can not be parsed. |
| RecordError | Exception raised when a record is bad. |
| FieldError | Exception raised when a field within a record is bad. |
| BiologicalSequenceError | General error for biological sequence validation failures. |
| SequenceCollectionError | General error for sequence collection validation failures. |
| DissimilarityMatrixError | General error for dissimilarity matrix validation failures. |
| DistanceMatrixError | General error for distance matrix validation failures. |
| DissimilarityMatrixFormatError | Error for reporting issues in dissimilarity matrix file format. |
| MissingIDError(missing_id) | Error for ID lookup that doesn’t exist in the dissimilarity matrix. |
| TreeError | General tree error |
| NoLengthError | Missing length when expected |
| DuplicateNodeError | Duplicate nodes with identical names |
| MissingNodeError | Expecting a node |
| NoParentError | Missing a parent |
| FastqParseError | Exception raised when a FASTQ formatted file cannot be parsed |
| StockholmParseError | |
| GeneticCodeError | Base class exception used by the GeneticCode class |
| GeneticCodeInitError | Exception raised by the GeneticCode class upon a bad initialization |
| InvalidCodonError | Exception raised by the GeneticCode class if __getitem__ fails |