skbio.parse.sequences.FastqIterator

class skbio.parse.sequences.FastqIterator(*args, **kwargs)[source]

Populate state based on fastq sequence

Note: thq ‘qual’ keyword argument is ignored by this object.

Methods

initialize_state(item) Do nothing here as the subclassed iterators update state directly
transform(dec_self) Transform state if necessary
valid_lengths(dec_self)
validate_ids(dec_self)