skbio.sequence.DNA.gaps

DNA.gaps()[source]

Find positions containing gaps in the biological sequence.

State: Stable as of 0.4.0.

Returns:

1D np.ndarray (bool)

Boolean vector where True indicates a gap character is present at that position in the biological sequence.

See also

has_gaps

Examples

>>> from skbio import DNA
>>> s = DNA('AC-G-')
>>> s.gaps()
array([False, False,  True, False,  True], dtype=bool)