skbio.sequence.RNA.__contains__

RNA.__contains__(subsequence)

Determine if a subsequence is contained in this sequence.

State: Stable as of 0.4.0.

Parameters

subsequence (str, Sequence, or 1D np.ndarray (np.uint8 or '|S1')) – The putative subsequence.

Returns

Indicates whether subsequence is contained in this sequence.

Return type

bool

Raises

TypeError – If subsequence is a Sequence object with a different type than this sequence.

Examples

>>> from skbio import Sequence
>>> s = Sequence('GGUCGUGAAGGA')
>>> 'GGU' in s
True
>>> 'CCC' in s
False