skbio.sequence.RNA.degenerates

RNA.degenerates()

Find positions containing degenerate characters in the sequence.

State: Stable as of 0.4.0.

Returns

Boolean vector where True indicates a degenerate character is present at that position in the biological sequence.

Return type

1D np.ndarray (bool)

See also

has_degenerates(), definites(), has_definites()

Examples

>>> from skbio import DNA
>>> s = DNA('ACWGN')
>>> s.degenerates()
array([False, False,  True, False,  True], dtype=bool)