Utility functionality (skbio.util
)¶
This package provides general exception/warning definitions used throughout scikit-bio, as well as various utility functionality, including I/O and unit-testing convenience functions.
Testing functionality¶
Common functionality to support testing in skbio.
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Return path to filename |
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Assert that ordination results objects are equal. |
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Raise AssertionError if |
Miscellaneous functionality¶
Generally useful functionality that doesn’t fit in more specific locations.
Return ordinal string version of cardinal int n. |
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Find duplicate elements in an iterable. |
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Computes an md5 sum without loading the file into memory |
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Decorator for class-level properties. |
Warning
Warn about potentially accidental use of inefficient code. |
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Warn about assumptions made for the successful completion of a process. |